Integrating cross_seg_comparison into seg_compare script #3
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egelfan2
commented
Oct 11, 2024
egelfan2
commented
- remove cross_seg_comparison standalone script
- integrated cross_seg_comparison functionality with seg_compare script
- updated seg_compare user guide to show functionality (sankey diagram doesn't load in github browser but functions)
code has been integrated with spatial compare script
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@egelfan2 can you fix the merge conflicts? maybe you made your initial branch a while back? |
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Updated to remove merge conflicts |
| @@ -6,15 +6,16 @@ | |||
| import scanpy as sc | |||
| import seaborn as sns | |||
| from scipy import sparse | |||
| from scipy.spatial import cKDTree | |||
| from pathlib import Path | |||
| import plotly.graph_objs as go | |||
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need to add plotly as a requirement
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Added plotly (and requisite dependency kaleido for saving png images) and tested fresh install
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also, the notebook doesn't have a visual of the sankey diagram: the notebook is serving as a how-to and also as way for people to see how it looks without running anything, so we need to make sure it's intact. could even save out a .png when it runs and load it back in. |
I'll try the png loading option, unfortunately the direct loading doesn't seem to work with jupyter. |
